Marée's publications with Systems and Modeling

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38 publications
1   2  
 
2013
A rich internet application for remote visualization and collaborative annotation of digital slide images in histology and cytology  
Raphaël Marée, Benjamin Stevens, Loïc Rollus, Natacha Rocks, Xavier Moles-Lopez, Isabelle Salmon, Didier Cataldo, Louis Wehenkel
BMC Diagnostic Pathology (Proc. 12th European Congress on Telepathology and 5th International Congress on Virtual Microscopy), Volume 8 S1 - 2013
Automated processing of zebrafish imaging data - a survey  
Ralf Mikut, Thomas Dickmeis, Wolfgang Driever, Pierre Geurts, Fred Hamprecht, Bernhard X Kausler, Maria J Ledesma-Carbayo, Raphaël Marée, Karol Mikula, Periklis Pantazis, Olaf Ronneberger, Andres Santos, Rainer Stotzka, Uwe Strähle, Nadine Peyriéras
Accepted for publication in Zebrafish - 2013
Extremely Randomized Trees and Random Subwindows for Image Classification, Annotation, and Retrieval   productFlyer_978-1-4471-4928-6-1.pdf
Raphaël Marée, Louis Wehenkel, Pierre Geurts
in Book Decision Forests in Computer Vision and Medical Image Analysis, Advances in Computer Vision and Pattern Recognition, Springer, page 125--141 - Feb 2013
Structural Determinants of Specificity and Catalytic Mechanism in mammalian 25-kDa Thiamine Triphosphatase  
David Delvaux, Frédéric Kerff, Mamidanna R.V.S. Murty, Bernard Lakaye, Jan Czerniecki, Grégory Kohn, Pierre Wins, Raphaël Herman, Valérie Gabelica, Fabien Heuze, X. Tordoir, Raphaël Marée, André Matagne, Paulette Charlier, Edwin De Pauw, Lucien Bettendorff
Accepted for publication in Biochimica et Biophysica Acta - General Subjects - 2013
 
2011
Automatic localization of interest points in zebrafish images with tree-based methods   stern_prib2011-finalpreprint.pdf
Olivier Stern, Raphaël Marée, Jessica Aceto, Nathalie Jeanray, Marc Muller, Louis Wehenkel, Pierre Geurts
To appear Proc. 6th IAPR International Conference on Pattern Recognition in Bioinformatics - 2011
Discovery and biochemical characterisation of four novel biomarkers for osteoarthritis  
Dominique deSeny, Mohammed Sharif, Marianne Fillet, Gaël Cobraiville, Marie-Alice Meuwis, Raphaël Marée, Jean-Philippe Hauzeur, Louis Wehenkel, Edouard Louis, Marie-Paule Merville, John Kirwan, Clio Ribbens, Michel Malaise
Annals of the Rheumatic Diseases, Volume 70, page 1144-1152 - 2011
High-density lipoprotein proteome dynamics in human endotoxemia   1477-5956-9-34.pdf
Johannes H.M. Levels, Pierre Geurts, Helen Karlsson, Raphaël Marée, Stefan Ljunggren, Louise Fornander, Louis Wehenkel, Mats Lindahl, Erik S.G. Stroes, Jan Albert Kuivenhoven, Joost C. M. Meijers
Proteome Science, Volume 9, Number 34 - 2011
Phenotype Classification of Zebrafish Embryos by Supervised Learning   abstract_njeanray-Benelearn_postreview_V2.pdf
Nathalie Jeanray, Raphaël Marée, Benoît Pruvot, Olivier Stern, Pierre Geurts, Louis Wehenkel, Marc Muller
Extended Abstract at 20 th Machine Learning conference of Belgium and The Netherlands - may 2011
Zebra sh Skeleton Measurements using Image Analysis and Machine Learning Methods   stern-abstract-benelearn2011.pdf
Olivier Stern, Raphaël Marée, Jessica Aceto, Nathalie Jeanray, Marc Muller, Louis Wehenkel, Pierre Geurts
Extended Abstract at 20 th Machine Learning conference of Belgium and The Netherlands - may 2011
 
2010
A web-based framework for visualization, annotation, and automatic exploitation of whole-slide images   maree-tiga2010.pdf
Arnaud Babilone, Samuel Cop, Rafik Rassaa, Natacha Rocks, Loïc Rollus, Didier Cataldo, Raphaël Marée
Poster at 2nd European Workshop on Tissue Imaging and Analysis, Heidelberg - Jun 2010
Biomedical Imaging Modality Classification Using Bags of Visual and Textual Terms with Extremely Randomized Trees   maree-iclef2010.pdf
Raphaël Marée, Olivier Stern, Pierre Geurts
Working Notes, ImageCLEF LAB Notebook, Multilingual and Multimodal Information Access Evaluation (CLEF) - Sep 2010
Incremental Indexing and Distributed Image Search using Shared Randomized Vocabularies   maree-mir2010.pdf mir053-maree-author.pdf
Raphaël Marée, Philippe Denis, Louis Wehenkel, Pierre Geurts
Proc. 11th ACM International Conference on Multimedia Information Retrieval (MIR), page 91-100 - March 2010
Oligodendrocyte development and myelinogenesis are not impaired by high concentrations of phenylalanine or its metabolites   nihms261793.pdf
Renaud Schoemans, Marie-Stéphane Aigrot, Chaohong Wu, Raphaël Marée, Pengyu Hong, Shibeshi Belachew, Claire Josse, Catherine Lubetzki, Vincent Bours
Journal of Inherited Metabolism Disease, Volume 33, Number 2, page 113-120 - 2010
 
2009
A Machine Learning Approach for Material Detection in Hyperspectral Images   maree-CVPR09-OTBVS-presentation.pdf maree-subcubes-otcbvs-cvpr09.pdf
Raphaël Marée, Benjamin Stevens, Pierre Geurts, Yves Guern, Philippe Mack
Proc. 6th IEEE Workshop on Object Tracking and Classification Beyond and in the Visible Spectrum (CVPR09) - Jun 2009
An Extra-trees-based Automatic Target Recognition Algorithm  
Jonathan Pisane, Raphaël Marée, Philippe Ries, Louis Wehenkel, Jacques Verly
Proc. International Radar Conference - oct 2009
Biomarker discovery in asthma-related inflammation and remodeling   2163_ftp.pdf
Florence Quesada Calvo, Marianne Fillet, Dominique deSeny, Marie-Alice Meuwis, Raphaël Marée, Celine Crahay, Genevieve Paulissen, Natacha Rocks, Maud Gueders, Louis Wehenkel, Marie-Paule Merville, Renaud Louis, Jean-Michel Foidart, Agnès Noel, Didier Cataldo
Proteomics, Volume 9, Number 8, page 2163-2170 - Apr 2009
Content-based Image Retrieval by Indexing Random Subwindows with Randomized Trees   maree-ipsj-cva-09-final.pdf
Raphaël Marée, Pierre Geurts, Louis Wehenkel
IPSJ Transactions on Computer Vision and Applications (open-access), Volume 1, Number 1, page 46-57 - jan 2009
Fast Multi-Class Image Annotation with Random Subwindows and Multiple Output Randomized Trees   dumont-visapp09-examples.pdf dumont-visapp09-shortpaper.pdf maree-visapp09-presentation.pdf
Marie Dumont, Raphaël Marée, Louis Wehenkel, Pierre Geurts
Proc. International Conference on Computer Vision Theory and Applications (VISAPP), Volume 2, page 196-203 - feb 2009
P2X1 ion channels promote neutrophil chemotaxis through Rho kinase activation   2801.full.pdf
Christelle Lecut, Kim Frederix, D.M. Johnson, C. Deroanne, M. Thiry, C. Faccinetto, N. Ruzicka, Raphaël Marée, R.J. Evans, P. Volders, Vincent Bours, Cécile Oury
Journal of Immunology - 2009
 
2008
A novel formulation of inhaled doxycycline reduces allergen-induced inflammation, hyperresponsiveness and remodeling by matrix metalloproteinases and cytokines modulation   gueders-al-BP08.pdf
Maud Gueders, Pascal Bertholet, Fabienne Perin, Natacha Rocks, Raphaël Marée, Vincent Botta, Renaud Louis, Jean-Michel Foidart, Agnès Noel, Brigitte Evrard, Didier Cataldo
Biochemical Pharmacology, Volume 75, Number 2, page 514-526 - Jan 2008
Compositional protein analysis of HDL by SELDI-TOF MS during experimental endotoxemia  
Johannes H.M. Levels, Raphaël Marée, Pierre Geurts, Jan Albert Kuivenhoven, Louis Wehenkel, John J.P. Kastelein, Joost C. M. Meijers
77th European Atherosclerosis Society Congress (Poster) - April 2008
Monomeric calgranulins determined by SELDI-TOF-MS compared with calprotectin measured by ELISA as biomarkers in arthritis  
Dominique deSeny, Marianne Fillet, Clio Ribbens, Raphaël Marée, Marie-Alice Meuwis, Laurence Lutteri, Jean-Paul Chapelle, Louis Wehenkel, Edouard Louis, Marie-Paule Merville, Michel Malaise
Clinical Chemistry, Volume 54, Number 6, page 1066-1075 - June 2008
Proteomics for prediction and characterization of response to infliximab in Crohn Disease: a pilot study  
Marie-Alice Meuwis, Marianne Fillet, Laurence Lutteri, Raphaël Marée, Pierre Geurts, Dominique deSeny, Michel Malaise, Jean-Paul Chapelle, Louis Wehenkel, Jacques Belaiche, Marie-Paule Merville, Edouard Louis
Clinical Biochemistry, Volume 41, Number 12, page 960-967 - Aug 2008
 
2007
Content-based Image Retrieval by Indexing Random Subwindows with Randomized Trees   maree-accv07-presentation.pdf maree-retrieval-accv07.pdf
Raphaël Marée, Pierre Geurts, Louis Wehenkel
Proc. 8th Asian Conference on Computer Vision (ACCV), LNCS, Volume 4844, page 611--620 - Nov 2007
Predetector: a new tool to identify regulatory elements in bacterial genomes   hiard2007-PREDetector.pdf
Samuel Hiard, Raphaël Marée, Séverine Colson, Paul A. Hoskinson, Fritz Titgemeyer, Gilles P. van Weeze, Bernard Joris, Louis Wehenkel, Sébastien Rigali
Biochemical and Biophysical Research Communications, Volume 357, Number 4, page 861-864 - June 2007
Random Subwindows and Extremely Randomized Trees for Image Classification in Cell Biology   maree-geurts-wehenkel-bmc-cell-biology-1471-2121-8-S1-S2.pdf
Raphaël Marée, Pierre Geurts, Louis Wehenkel
BMC Cell Biology supplement on Workshop of Multiscale Biological Imaging, Data Mining and Informatics, Volume 8, Number S1 - July 2007
Random Subwindows and Multiple Output Decision Trees for Generic Image Annotation   poster-benelearn07.pdf
Marie Dumont, Raphaël Marée, Pierre Geurts, Louis Wehenkel
16th Annual Machine Learning Conference of Belgium and The Netherlands, Poster - 2007
Random Subwindows and Randomized Trees for Image Retrieval, Classification, and Annotation   maree-poster-ismb07.pdf
Raphaël Marée, Marie Dumont, Pierre Geurts, Louis Wehenkel
15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 6th European Conference on Computational Biology (ECCB), Posters Track - 2007
 
2006
Biological Image Classification with Random Subwindows and Extra-Trees   maree-bioimage2006.pdf maree-biomage06-slides.pdf
Raphaël Marée, Pierre Geurts, Louis Wehenkel
Workshop on Multiscale Biological Imaging, Data Mining & Informatics - sep 2006
Reinforcement learning with raw image pixels as input state   ernst-iwicpas-2006-slides.pdf ernst-iwicpas-2006.pdf
Damien Ernst, Raphaël Marée, Louis Wehenkel
Proc. International Workshop on Intelligent Computing in Pattern Analysis/Synthesis (IWICPAS), Lecture Notes in Computer Science, Volume 4153, page 446-454 - aug 2006
Segment and combine: a generic approach for supervised learning of invariant classifiers from topologically structured data   geurts-benelearn06-final.pdf
Pierre Geurts, Raphaël Marée, Louis Wehenkel
Proceedings of the Machine Learning Conference of Belgium and The Netherlands (Benelearn), page 15-23 - 2006
 
2005
Biomedical Image Classification with Random Subwindows and Decision Trees   maree-iccv2005-biomedical.pdf maree-poster-iccv2005-biomedical.pdf
Raphaël Marée, Pierre Geurts, Justus Piater, Louis Wehenkel
Proc. ICCV workshop on Computer Vision for Biomedical Image Applications (CVIBA 2005), Volume 3765, page 220-229 - oct 2005
Classification automatique d'images par arbres de décision   maree-these05-slides.pdf maree-these05.pdf
Raphaël Marée
PhD thesis from University of Liège - Electrical Engineering and Computer Science - February 2005
Decision Trees and Random Subwindows for Object Recognition   maree-icml-mlmm05.pdf
Raphaël Marée, Pierre Geurts, Justus Piater, Louis Wehenkel
ICML workshop on Machine Learning Techniques for Processing Multimedia Content (MLMM2005) - 2005
Random Subwindows for Robust Image Classification   maree-cvpr2005-slides.pdf maree-cvpr2005.pdf
Raphaël Marée, Pierre Geurts, Justus Piater, Louis Wehenkel
Proceedings of the IEEE International Conference on Computer Vision and Pattern Recognition (CVPR 2005), Volume 1, page 34--40 - June 2005
 
2004
A generic approach for image classification based on decision tree ensembles and local sub-windows   maree-accv2004.pdf
Raphaël Marée, Pierre Geurts, Justus Piater, Louis Wehenkel
Proceedings of the 6th Asian Conference on Computer Vision, Volume 2, page 860-865 - 2004
 
2003
An empirical comparison of machine learning algorithms for generic image classification   maree-ai2003-comparison.pdf
Raphaël Marée, Pierre Geurts, Giorgio Visimberga, Justus Piater, Louis Wehenkel
Proceedings of the 23rd SGAI international conference on innovative techniques and applications of artificial intelligence, Research and development in intelligent systems XX,, page 169-182 - 2003
Une méthode générique pour la classification automatique d'images à partir des pixels   maree-jds2003-msi.pdf
Raphaël Marée, Pierre Geurts, Louis Wehenkel
Revue des nouvelles technologies de l'information, Numéro spécial entreposage et fouille de données, Volume 1, page 227-238 - 2003

38 publications
1   2